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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015862329.1_cds_XP_016515277.1_27639
CDS Infomation

[gene=LOC107831990] [db_xref=GeneID:107831990] [protein=vacuolar protein sorting-associated protein 52 A-like isoform X2] [protein_id=XP_016515277.1] [location=join(7953..7979,8078..8160,8272..8329,8479..8574,9643..9744,10018..10101,11698..11778,12462..12605,13374..13465,14349..14430,14871..15053,16225..16340,16482..16540,16902..17002,19716..19766,20361..20540,20688..20822,21276..21350,21985..22042,22114..22418)] [gbkey=CDS]
Sequence

ATGGCGGAGGTGGCTGACAACACATCGGCCAATGCGAATAATGGACAGAAATCTTTCTTT
GATTTGGGATCCTTCGTTGGCGATTTGAATATTGAGGATGAAATTGCCAGTGCTGATATA
TCCCTTGAGGGGCTTGAGGAAGAGTTACAGGAATGTAAAACTGATGATGTTGTCGCAAAC
ATACTTTCTAAAGGTACAACGTTGCGGGAATACACTAAAGGCGTTGAAAACAATTTGCGG
CAAGTTGAATTGGATTCTATCCAGGATTACATAAAGGAAAGTGATAATCTAGTCTCACTT
CATGATCAAATTCGTGATTGCGACATGATTCTTACCCAAATGGAGACTCTTCTCAGTGGA
TTTCAGGGAGAGATAGGTTCTATAAGTTCAGATATCAAAATTCTCCAAGAGAAGTCTATG
GATATGGGACTGAGGCTGAAGAATCGCAAGGTGGCAGAGTCAAAGCTGGCAAAGTTTGTC
GAGGATATTATTGTTCCTCCAAGGATGATAGACATAATTGTTGATGGAGAGGTTAATGAG
GAATACATGAGGACCCTTGAGATTTTGAGTAAAAAGCTGAAGTATTCAGATGCAGATCTC
ATGGTTAAAACATCAAAGGCTCTGAAAGATGTTCGGCCTGAACTACAAAGACTTAGGCAG
AAAGCGGTCTCCAAGGTGTTTGATTTCATGGTTCAGAAGCTATACTCTTTAAGGAAACCC
AAAACTAATATTCAGATCCTTCAGCAGAGTGTCCTTCTAAAATATAAGTATATCCTTTCC
TTTCTTAAGGAGCATGGCAAGGAGGTGTATCTTGAGGTTCGAGCTGCATACACTGACACA
ATGAACAAGGTTCTGAGTGCACAGTTCCGCGCTTATATTCAAGCTTTAGAAAAGCTTCAG
TTGGATATAGCAACATCTAATGATCTGATAGGTGTTGAGACCAGAAGCACAGGTCTTTTC
TTGAGAGGAAGAGAACCATTGAAGAACAGGTCTGCAGTTTTTGCTCTTGGAGAAAGGATA
AACATTCTCAAGGAGATTGAAGAGCCTCCATTAATTCCACATATCGCTGAAGCCAGCTCA
AAAAAATATCCGTATGAGGTCCTTTTCAGGAGTTTGCACAAGCTGCTCATGGATACTGCT
TCTTCGGAGTACCTTTTCTGTGATGATTTCTTTGGAGAGCAGACCATGTTTTATGATATA
TTTGCTGGCCCATTTTCAGTAATTGATGAGCATTTCGGTACAATCCTTCCCAATAGTTTT
GATGCAATTGGCTTACTGCTCATGATTCGCATCATATACCACCACCAGCTTGTAATGTCC
AGACGCCGAATTCCATGCCTGGATTCATACTTAGACAAGGTCAATATTGCTTTATGGCCA
CGTTTCAAGATGGTCTTTGACTTGCACCTCAACAGCCTGCGAAATGCCAATATCAGGACT
CTCTGGGAAGATGATGTTCACCCACATTATGTCATAAGGCGCTATGCTGAGTTTACTGCC
TCCCTTATTCACCTTAATGTAGAATATGGAGATGGGCAGCTTGAACTGAATCTGGAGAGA
CTCAGAATGGCTGTTGATGACTCGCTTGTCAAGCTAGCACAAATGTTCGCTAAACAAAAG
CAGCAAACCGTATTCCTTATAAACAACTACGACATGACAATATCGGTTCTGAAGGAAGCT
GGTCCAGATGGGGGGAAGATCCAGCAGCACTTTGAAGAGCTTCTAAAGAATAACACATCC
ATATTCGTGGAAGAATTGCTATTGGAACATTTTAGCGATCTTATCAAGTTTGTAAAGACG
AGAGGGTCTGAGGATCCAAGTATTGGCACTGAAAGGCCTATAACTATTGCTGAAGTCGAG
CCGATTGTAAAGGACTTTGCAAGCAGATGGAAAGCCGCAATTGAACTTATGCACAATGAT
GTCATTACTTCTTTCAGCAATTTCCTGTGTGGAATGGACATTCTAAGAGCTGCATTAACT
CAACTTCTTCTTTATTATACGAGGCTTTCAGATTGTATAAAGAGGATAAATGGTGGGTCT
ACATTGAACAAAGATCTTGTTTCAATTTCATCCATAGTGTATGAGATCAGAAAATACTCA
AGGACTTTCTAG

Peptide Sequence

PEP ID

XP_016515277.1
PEP Infomation

PREDICTED: vacuolar protein sorting-associated protein 52 A-like isoform X2 [Nicotiana tabacum]
Sequence

MAEVADNTSANANNGQKSFFDLGSFVGDLNIEDEIASADISLEGLEEELQECKTDDVVAN
ILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDMILTQMETLLSG
FQGEIGSISSDIKILQEKSMDMGLRLKNRKVAESKLAKFVEDIIVPPRMIDIIVDGEVNE
EYMRTLEILSKKLKYSDADLMVKTSKALKDVRPELQRLRQKAVSKVFDFMVQKLYSLRKP
KTNIQILQQSVLLKYKYILSFLKEHGKEVYLEVRAAYTDTMNKVLSAQFRAYIQALEKLQ
LDIATSNDLIGVETRSTGLFLRGREPLKNRSAVFALGERINILKEIEEPPLIPHIAEASS
KKYPYEVLFRSLHKLLMDTASSEYLFCDDFFGEQTMFYDIFAGPFSVIDEHFGTILPNSF
DAIGLLLMIRIIYHHQLVMSRRRIPCLDSYLDKVNIALWPRFKMVFDLHLNSLRNANIRT
LWEDDVHPHYVIRRYAEFTASLIHLNVEYGDGQLELNLERLRMAVDDSLVKLAQMFAKQK
QQTVFLINNYDMTISVLKEAGPDGGKIQQHFEELLKNNTSIFVEELLLEHFSDLIKFVKT
RGSEDPSIGTERPITIAEVEPIVKDFASRWKAAIELMHNDVITSFSNFLCGMDILRAALT
QLLLYYTRLSDCIKRINGGSTLNKDLVSISSIVYEIRKYSRTF

Transcript Sequence

Gene sequence data has not been registered.